/* double (precision) Triangular Packed Matrices * Note: this means *square* {n x n} matrices */ #include "dtpMatrix.h" SEXP dtpMatrix_validate(SEXP obj) { SEXP val = triangularMatrix_validate(obj); if(isString(val)) return(val); else { int d = INTEGER(GET_SLOT(obj, Matrix_DimSym))[0], lx = length(GET_SLOT(obj, Matrix_xSym)); /* packed_ncol() [Mutils.h] checks, but gives *error* .. need string: */ if(lx * 2 != d*(d+1)) return(mkString(_("Incorrect length of 'x' slot"))); return ScalarLogical(1); } } static double get_norm(SEXP obj, const char *typstr) { char typnm[] = {'\0', '\0'}; int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym)); double *work = (double *) NULL; typnm[0] = La_norm_type(typstr); if (*typnm == 'I') { work = (double *) R_alloc(dims[0], sizeof(double)); } return F77_CALL(dlantp)(typnm, uplo_P(obj), diag_P(obj), dims, REAL(GET_SLOT(obj, Matrix_xSym)), work); } SEXP dtpMatrix_norm(SEXP obj, SEXP type) { return ScalarReal(get_norm(obj, CHAR(asChar(type)))); } SEXP dtpMatrix_rcond(SEXP obj, SEXP type) { int *dims = INTEGER(GET_SLOT(obj, Matrix_DimSym)), info; char typnm[] = {'\0', '\0'}; double rcond; typnm[0] = La_rcond_type(CHAR(asChar(type))); F77_CALL(dtpcon)(typnm, uplo_P(obj), diag_P(obj), dims, REAL(GET_SLOT(obj, Matrix_xSym)), &rcond, (double *) R_alloc(3*dims[0], sizeof(double)), (int *) R_alloc(dims[0], sizeof(int)), &info); return ScalarReal(rcond); } SEXP dtpMatrix_solve(SEXP a) { SEXP val = PROTECT(duplicate(a)); int info, *Dim = INTEGER(GET_SLOT(val, Matrix_DimSym)); F77_CALL(dtptri)(uplo_P(val), diag_P(val), Dim, REAL(GET_SLOT(val, Matrix_xSym)), &info); UNPROTECT(1); return val; } SEXP dtpMatrix_getDiag(SEXP x) { int n = *INTEGER(GET_SLOT(x, Matrix_DimSym)); SEXP val = PROTECT(allocVector(REALSXP, n)); d_packed_getDiag(REAL(val), x, n); UNPROTECT(1); return val; } SEXP ltpMatrix_getDiag(SEXP x) { int n = *INTEGER(GET_SLOT(x, Matrix_DimSym)); SEXP val = PROTECT(allocVector(LGLSXP, n)); l_packed_getDiag(LOGICAL(val), x, n); UNPROTECT(1); return val; } SEXP dtpMatrix_matrix_mm(SEXP x, SEXP y) { SEXP val = PROTECT(dup_mMatrix_as_dgeMatrix(y)); /* Since 'x' is square (n x n ), dim(x %*% y) = dim(y) */ int *xDim = INTEGER(GET_SLOT(x, Matrix_DimSym)), *yDim = INTEGER(GET_SLOT(val, Matrix_DimSym)); int ione = 1, j; const char *uplo = uplo_P(x), *diag = diag_P(x); double *xx = REAL(GET_SLOT(x, Matrix_xSym)), *vx = REAL(GET_SLOT(val, Matrix_xSym)); if (yDim[0] != xDim[1]) error(_("Dimensions of a (%d,%d) and b (%d,%d) do not conform"), xDim[0], xDim[1], yDim[0], yDim[1]); for (j = 0; j < yDim[1]; j++) /* X %*% y[,j] via BLAS 2 DTPMV(.) */ F77_CALL(dtpmv)(uplo, "N", diag, yDim, xx, vx + j * yDim[0], &ione); UNPROTECT(1); return val; } SEXP dtpMatrix_matrix_solve(SEXP a, SEXP b) { SEXP val = PROTECT(dup_mMatrix_as_dgeMatrix(b)); /* Since 'x' is square (n x n ), dim(x %*% b) = dim(b) */ int *aDim = INTEGER(GET_SLOT(a, Matrix_DimSym)), *bDim = INTEGER(GET_SLOT(val, Matrix_DimSym)); int ione = 1, j; const char *uplo = uplo_P(a), *diag = diag_P(a); double *ax = REAL(GET_SLOT(a, Matrix_xSym)), *vx = REAL(GET_SLOT(val, Matrix_xSym)); if (bDim[0] != aDim[1]) error(_("Dimensions of a (%d,%d) and b (%d,%d) do not conform"), aDim[0], aDim[1], bDim[0], bDim[1]); for (j = 0; j < bDim[1]; j++) /* a^{-1} %*% b[,j] via BLAS 2 DTPSV(.) */ F77_CALL(dtpsv)(uplo, "N", diag, bDim, ax, vx + j * bDim[0], &ione); UNPROTECT(1); return val; } /* FIXME: This function should be removed and a rtP argument added to * dtpMatrix_matrix_mm */ SEXP dgeMatrix_dtpMatrix_mm(SEXP x, SEXP y) { SEXP val = PROTECT(duplicate(x)); /* Since 'y' is square (n x n ), dim(x %*% y) = dim(x) */ int *xDim = INTEGER(GET_SLOT(x, Matrix_DimSym)), *yDim = INTEGER(GET_SLOT(y, Matrix_DimSym)); int i; const char *uplo = uplo_P(y), *diag = diag_P(y); double *yx = REAL(GET_SLOT(y, Matrix_xSym)), *vx = REAL(GET_SLOT(val, Matrix_xSym)); if (yDim[0] != xDim[1]) error(_("Dimensions of a (%d,%d) and b (%d,%d) do not conform"), xDim[0], xDim[1], yDim[0], yDim[1]); for (i = 0; i < xDim[0]; i++)/* val[i,] := Y' %*% x[i,] */ F77_CALL(dtpmv)(uplo, "T", diag, yDim, yx, vx + i, /* incr = */ xDim); UNPROTECT(1); return val; } SEXP dtpMatrix_as_dtrMatrix(SEXP from) { SEXP val = PROTECT(NEW_OBJECT(MAKE_CLASS("dtrMatrix"))), uplo = GET_SLOT(from, Matrix_uploSym), diag = GET_SLOT(from, Matrix_diagSym), dimP = GET_SLOT(from, Matrix_DimSym), dmnP = GET_SLOT(from, Matrix_DimNamesSym); int n = *INTEGER(dimP); SET_SLOT(val, Matrix_DimSym, duplicate(dimP)); SET_SLOT(val, Matrix_DimNamesSym, duplicate(dmnP)); SET_SLOT(val, Matrix_diagSym, duplicate(diag)); SET_SLOT(val, Matrix_uploSym, duplicate(uplo)); packed_to_full_double(REAL(ALLOC_SLOT(val, Matrix_xSym, REALSXP, n*n)), REAL(GET_SLOT(from, Matrix_xSym)), n, *CHAR(STRING_ELT(uplo, 0)) == 'U' ? UPP : LOW); UNPROTECT(1); return val; }