IBCarbonFramework NSApplication main R R About R 0 abou General information on this binary distribution of R for MacOSX Check for R updates nraq Checks for new versions of RAqua on CRAN _NSAppleMenu File File Source R Code... o open Edit File... edtf File Show... f fshw TRUE Close w clos Save s save Save As... S svas TRUE Page Setup... P page Print... p prnt Edit Edit Undo z undo Redo Z 1179648 redo TRUE Cut x cut Copy c copy Paste v past Clear clea Select All a sall TRUE Edit Object e edbj Open R Object editor Tools Tools Load history hstl Loads the history file in the current working directory Save history hsts Saves command history file into the current working directory Show history hstw Shows history file TRUE Change Working Directory... d scwd Set the current working directory to a specified location Show Working Directory shwd Shows current working directory Reset Working Directory rswd Sets working directory to user's home Workspace Workspace Show Workspace dols Show the objects in the workspace Clear Workspace dorm Remove all objects from workspace Browse Workspace shwb A browser for the R objects TRUE Load Workspace ldws Load workspace in current working directory Load Workspace File.. lwsf Load Workspace previously saved on file TRUE Save Workspace svws Save the content of the workspace in the current working directory Save Workspace As... swsf Save Workspace on a file Packages Packages Package Manager ipkg Shows the list of currently installed packages and allow for loading and unloading them in the current session Datasets Manager shdt Shows the lists of available datasets and allow to the select dataset to load in the current session TRUE Get CRAN Packages Get CRAN Packages Ready-to-use Binary crab Download and install (binary) packages from CRAN Source cran Download and compile source packages from CRAN Update CRAN packages Update CRAN packages Ready-to-use Binary crub Update packages with newer binary versions on CRAN Source crup Compile and update packages with newer source versions on CRAN TRUE BioConductor BioConductor Download all bial Get all BioConductor packages Download Affy bundle biaf Get BioConductor packages for analyzing Affymetrix expression arrays Download cDNA bundle bicd Get BioConductor packages for analyzing cDNA arrays Update BioConductor bcup Update to the most recent version of BioConductor packages Individual packages Individual packages Ready-to-use binary biob Source bioc Download individual packages from Bioconductor TRUE Install from local files Install from local files Binary package file (.tgz) ipbt Install a binary package file (.tgz) from a local directory Source package file (.tar.gz) ipfs Install source package from a local file (tarball) Source directory ipsd Install source package from a local directory tree Window Window New Edit Window n new Open a brand new editable window TRUE New quartz() window N 1179648 nwqz Opens a new quartz() device and make the active one for R Activate quartz() device A 1179648 awqz Activate the quartz() device corresponding to the current graphic window TRUE TRUE Minimize Window m mini TRUE Minimize All Windows m 1572864 mini TRUE TRUE Bring All to Front frnt TRUE Bring in Front 1572864 frnt _NSWindowsMenu _NSMainMenu 106 168 470 737 R Console 0 0 364 569 23 0 24 581 RGUI 1001 4 550 20 566 RGUI 1000 4 414 20 535 RGUI 1002 TRUE 1 Working... 1 6 20 17 374 RGUI 1045 TRUE 3 Current Working Directory Current working directory 50 7 211 300 449 677 About R 0 0 238 377 0 0 377 238 109 20 142 357 20 109 337 33 0FFF 133 TRUE 1 Copyiright Info Copyright Info 1 192 20 218 357 20 192 337 26 0FFF 135 TRUE 1 Thanks to People who help the development of RAqua 1 20 20 36 357 20 20 337 16 0FFF 132 TRUE 1 Version Info Version of the R Kernel 1 157 20 184 357 20 157 337 27 0FFF 134 TRUE 1 R author RAqua GUI developers 1 FALSE FALSE FALSE FALSE FALSE TRUE 1 1 100 44 574 542 R Preferences 0 0 474 498 424 141 444 211 PREF 5000 Apply Use current preferences settings for the current session only 1 424 268 444 338 PREF 5003 Save Applies current settings to this session and saves for future use 424 398 444 468 PREF 5001 Cancel Ignores the changes and exits the Preferences panel 2 424 20 444 96 PREF 5002 Defaults Resets settings to default values. Does not apply or save changes until you take an action. 12 20 396 478 49 20 396 478 69 48 166 448 136 64 156 206 PREF 1005 Tab size : Sets the tabsize for all text windows Popup: TRUE TRUE 1 TRUE 2 TRUE 3 TRUE 4 TRUE 5 TRUE 6 TRUE 7 TRUE 8 TRUE 9 TRUE 10 TRUE 11 TRUE 12 TRUE 13 TRUE 14 TRUE 15 99 64 119 275 PREF 1002 Font name : Choose one of these fixed fonts Popup: TRUE TRUE Andale Mono TRUE Courier TRUE Courier New TRUE Monaco TRUE VT100 100 289 120 438 PREF 1003 Font size : Sets the font size 11 Popup: TRUE 8 TRUE 9 TRUE 10 TRUE 11 TRUE 12 TRUE 14 TRUE 18 TRUE 24 TRUE 36 TRUE 48 TRUE TRUE 64 TRUE 72 PREF 1001 Fonts and Tabs 182 48 277 448 210 64 226 150 PREF 1007 Read Only This option applies to all read-only windows like R Console Out and any other read-only windows like R Help, etc. 210 158 230 274 PREF 1009 Choose Color Sets foreground color 245 64 261 150 PREF 1008 Read & Write This option applies to all read-write windows like R Console In and any other read-write windows like R Edit, etc. 242 158 262 274 PREF 1010 Choose Color Sets foreground color 210 286 230 440 PREF 1011 Choose Background Sets background color 242 286 262 440 PREF 1012 Choose Background Sets background color PREF 1006 Text Colors 289 48 375 448 319 64 333 401 PREF 1063 Set R Console width on window resize If selected, when the user resizes the R Console, the width option in R is set to display the maximum number of characters for the selected font size 345 64 359 421 PREF 1062 Save R Console window position and size on exit If selected, on R exit, the position and size of the R Console window is saved and used next time R is launched R Console PRTB 1000 Text Windows 2 49 20 396 478 118 68 138 173 PREF 3001 Device Font Select Font size and family for the quartz. Style is ignored. 158 58 254 458 192 74 208 150 PREF 3005 Width 222 74 238 150 PREF 3006 Height 193 178 209 255 PREF 3008 5 223 178 239 255 PREF 3009 6 192 312 208 388 PREF 3011 inches 222 312 238 388 PREF 3012 inches PREF 3003 Device Dimensions 272 58 330 458 300 70 314 172 PREF 3013 Antialiasing With Antialiasing "ON" it looks very nice but slower. 1 300 337 314 442 PREF 3014 Auto Refresh With Auto Refresh "ON" it is slower but more user friendly 1 PREF 3013 Quartz Features 120 216 136 455 PREF 3002 FALSE Font Name and Size Should be a Postscript Font Name 346 58 360 458 PREF 3007 Override R quartz() device defaults The above quartz device settings take place only when this option is checked, otherwise R default options for the quartz device are considered. 78 68 98 370 PREF 3015 Quartz window position : Sets relative position of the Quartz device on the screen. Default is Top - Right. Changes will take place on the next opened Quartz device. Popup: TRUE TRUE Top - Right TRUE Bottom - Right TRUE Bottom - Left TRUE Top - Left TRUE Center PRTB 1001 2 49 20 396 478 115 40 292 458 Internet package archives 163 72 179 148 CRAN -1 227 50 243 148 Bioconductor -1 228 159 244 415 PREF 4502 http://www.bioconductor.org Your bioconductor repository TRUE 164 159 180 415 PREF 4501 http://cran.r-project.org Choose a CRAN mirror from the list at http://cran.r-project.org/mirrors/ TRUE PRTB 1002 Packages 2 49 20 396 478 118 55 132 458 PREF 6000 Show system console output (stdout) in the R console Check this item if you want to grab stdout to the R Console Out. This is useful to have feedback on things like packages installation 1 148 55 162 412 PREF 6001 Show system error output (stderr) in the R console Check this item if you want to grab stderr to the R Console Out. This is useful to have feedback on things like packages installation of system() calls 1 203 130 246 438 223 146 239 422 PREF 6009 TRUE 3 ~/ The preferred startup working directory. The default is user's home "~/". PREF 6008 Initial Working Directory 221 40 241 110 PREF 6010 Change Use this button to change the setting. PRTB 1003 2 PRTT 1000 contentResID 0 tabEnabled 1 tabName Text Windows userPane contentResID 0 tabEnabled 1 tabName Quartz Device userPane contentResID 0 tabEnabled 1 tabName Packages userPane contentResID 0 tabEnabled 1 tabName Misc userPane FALSE FALSE FALSE FALSE FALSE 5 49 7 Choose your favorite R settings -10759 26130 -10461 26570 -18395 1687 -18393 1687 AntiAliasing -18395 31898 -18393 31900 Auto Refresh -18295 -31885 -18279 -31492 Font Name -18335 -29767 -18315 -29759 Choose Font -1938 -27475 -1942 -27480 12 -18333 -25643 -18317 -25567 Point Size -18194 -23668 -18198 -23668 5 -18205 -21785 -18189 -21738 Width: -18205 -19613 -18189 -19566 Height: 2 Get BioConductor Packages Get BioConductor Packages Ready-to-use Binary biob Download and install binary packages from the BioConductor project Source bioc Download and compile source packages from the BioConductor project Update BioConductor Packages Update BioConductor Packages Ready-to-use Binary bcub Update packages with newer binary version at BioConductor Source bcup Compile and update packages with newer source versions at BioConductor 140 260 291 648 R Input Dialog 0 0 151 388 0 0 388 151 20 20 61 368 20 20 348 41 RDLG 1000 Message Text 1 72 23 88 365 23 72 342 16 RDLG 1001 Input text field TRUE 111 298 131 368 298 111 70 20 RDLG 1002 Proceed 1 111 20 131 90 20 111 70 20 RDLG 1003 Cancel 2 FALSE FALSE TRUE 4 49 1 23595 -920 23615 -919 PREF 1002 Choose Font Select Font size and family for text windows. Style is ignored. Menu TRUE R Help ? rhlp Open the help pages in a browser TRUE R for MAC OS X FAQ rfaq Open the FAQ for the R porting of Mac OS X TRUE What's new in this version rwsn Open the list of new features and bug fixes for this version TRUE Help on topic... rhot Interface to help(command) TRUE Search help on... rsho Interface to help.search("something") TRUE Run examples of... rexr Interface to example(command) AboutWindow Files Owner IBCarbonMenuItem IBCarbonMenuItem1 InputDialog MainWindow MenuBar MyHelpMenu PrefsWindow 481