.ess_weave <- function(command, file, encoding = NULL){ cmd_symb <- substitute(command) if(grepl('knit|purl', deparse(cmd_symb))) require(knitr) od <- getwd() on.exit(setwd(od)) setwd(dirname(file)) frame <- parent.frame() if(is.null(encoding)) eval(bquote(.(cmd_symb)(.(file))), envir = frame) else eval(bquote(.(cmd_symb)(.(file), encoding = .(encoding))), envir = frame) } .ess_knit <- function(file, output = NULL){ library(knitr) frame <- parent.frame() od <- getwd() on.exit(setwd(od)) setwd(dirname(file)) ## this bquote is really needed for data.table := operator to work correctly eval(bquote(knit(.(file), output = .(output))), envir = frame) } .ess_sweave <- function(file, output = NULL){ od <- getwd() frame <- parent.frame() on.exit(setwd(od)) setwd(dirname(file)) eval(bquote(Sweave(.(file), output = .(output))), envir = frame) } ## Users might find it useful. So don't prefix with .ess. htsummary <- function (x, hlength = 4, tlength = 4, digits = 3) { ## fixme: simplify and generalize snames <- c("mean", "sd", "min", "max", "nlev", "NAs") d <- " " num_sumr <- function(x){ c(f(mean(x, na.rm = TRUE)), f(sd(x, na.rm = TRUE)), f(min(x, na.rm = TRUE)), f(max(x, na.rm = TRUE)), d, f(sum(is.na(x), na.rm = TRUE))) } f <- function(x) format(x, digits = digits) if (is.data.frame(x) | is.matrix(x)) { if (nrow(x) <= tlength + hlength){ print(x) } else { if (is.matrix(x)) x <- data.frame(unclass(x)) ## conversion needed, to avoid problems with derived classes suchs as data.table h <- as.data.frame(head(x, hlength)) t <- as.data.frame(tail(x, tlength)) for (i in 1:ncol(x)) { h[[i]] <- f(h[[i]]) t[[i]] <- f(t[[i]]) } ## summaries sumr <- sapply(x, function(c){ if(is.logical(c)) ## treat logical as numeric; it's harmless c <- as.integer(c) if(is.numeric(c)) num_sumr(c) else if(is.factor(c)) c(d, d, d, d, nlevels(c), sum(is.na(c))) else rep.int(d, length(snames)) }) sumr <- as.data.frame(sumr) row.names(sumr) <- snames dots <- rep("...", ncol(x)) empty <- rep.int(" ", ncol(x)) lines <- rep.int(" ", ncol(x)) df <- rbind(h, ...= dots, t, `_____` = lines, sumr, ` ` = empty) print(df) } } else { cat("head(", hlength, "):\n", sep = "") print(head(x, hlength)) if(length(x) > tlength + hlength){ cat("\ntail(", tlength, "):\n", sep = "") print(tail(x, tlength)) } cat("_____\n") if(is.numeric(x) || is.logical(x)) print(structure(num_sumr(x), names = snames), quote = FALSE) else if(is.factor(x)){ cat("NAs: ", sum(is.na(x), na.rm = TRUE), "\n") cat("levels: \n") print(levels(x)) } } invisible(NULL) } .ess_vignettes <- function(){ vs <- unclass(browseVignettes()) vs <- vs[sapply(vs, length) > 0] mat2elist <- function(mat){ if(!is.null(dim(mat))){ apply(mat, 1, function(r) sprintf("(list \"%s\")", paste0(gsub("\"","\\\\\"", as.vector(r[c("Title", "Dir", "PDF", "File", "R")])), collapse = "\" \""))) } } cat("(list \n", paste0(mapply(function(el, name) sprintf("(list \"%s\" %s)", name, paste0(mat2elist(el), collapse = "\n")), vs, names(vs)), collapse = "\n"), ")\n") }